Thursday, April 18, 2013

Reproductive tract secretions elicit ovulation

Apr. 17, 2013 ? Eggs take a long time to produce in the ovary, and thus are one of a body's precious resources. It has been theorized that the body has mechanisms to help the ovary ensure that ovulated eggs enter the reproductive tract at the right time in order to maximize the chance of successful fertilization.

New research from Carnegie's Allan Spradling and Jianjun Sun has shed light on how successful ovulation and fertilization are brought about by studying these processes in fruit flies. They found that secretions from special glands within the fruit fly's reproductive tract contribute to both ovulation and sperm function, and that this secretion is controlled by a specific hormone receptor gene, called Hr39. Their results suggest that Lrh-1, a mammalian receptor gene closely related to Hr39, also regulates ovulation by controlling reproductive tract secretions in mammals. Their findings are published by eLife.

Sun and Spradling's research provides an example of how the biological processes underlying a specific type of human tissue are often fundamentally similar to the biology of analogous tissues in seemingly very different species, such as insects. These common processes are not an accident, but rather are a consequence of the common evolutionary history of virtually all multicellular organisms on Earth. As a result of these similarities, researchers can genetically manipulate fruit flies in order to identify the genes and pathways controlling a biological process -- in this case ovulation -- and then use genome sequencing to identify the corresponding genes in other species, including humans.

Sun and Spradling began such a strategy a few years ago by characterizing how the glands within the ovary develop. Soon, they were able to tweak normal development to generate flies with anywhere from zero to the normal number of about 200 secretory cells, as well as adults in which secretory cell function could be turned on or off at will. Mice with the same properties would be a much bigger challenge to produce and would yield results much more slowly. Of course, such studies could not be undertaken with humans.

Using these special tools, the researchers confirmed that one important role of reproductive tract secretions is to protect and store sperm. At least 25 secretory cells are required, and their products attract sperm to glands where they can remain safely while bathed in the secretory fluid. Similar storage takes place in a region of the human Fallopian tube known as the isthmus. Sperm are thought to persist in the isthmus for only a few days, but can be stored for a week or more in the case of fruit flies. When production of the secretion is compromised, sperm have difficulty getting to the gland and those that can make it undergo abnormal changes.

The secretory "machinery" studied in these experiments may allow the reproductive tract to signal the ovary when it is ready to receive an egg. Waiting for such a signal before releasing an egg could reduce the chance that an egg would fail to enter the reproductive tract or arrive before active sperm were available.

Interestingly, Spradling and Sun's work shows that different secretions are responsible for ovulation from those responsible for attracting and storing sperm. Identifying the specific secretory cell products (and the corresponding genes) that are required for successful ovulation would be an important step in understanding the mechanisms of this still-mysterious process.

This research has a possible connection to one of the most common forms of ovarian cancer, which was recently shown to derive from abnormalities in reproductive tract secretory cells. The genes and pathways that cells use in carrying out their normal functions are often the targets of the alternations that drive cancer cell growth. Thus, this work should stimulate investigation of the role played by genes such as Lrh1 in this devastating disease.

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The above story is reprinted from materials provided by Carnegie Institution.

Note: Materials may be edited for content and length. For further information, please contact the source cited above.


Journal Reference:

  1. Jianjun Sun, Allan C Spradling. Ovulation in Drosophila is controlled by secretory cells of the female reproductive tract. eLife, 2013 DOI: 10.7554/eLife.00415

Note: If no author is given, the source is cited instead.

Disclaimer: This article is not intended to provide medical advice, diagnosis or treatment. Views expressed here do not necessarily reflect those of ScienceDaily or its staff.

Source: http://feeds.sciencedaily.com/~r/sciencedaily/most_popular/~3/yX5_s1AYpFU/130417114101.htm

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Wednesday, April 17, 2013

Count Frequency Of Strings In Java Binary Tree ... - Dream In Code


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    #1 ccb77 ?Icon User is online

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    Posted Today, 12:14 PM

    How do I implement a frequency counter in a treenode that increases when the user enters an existing word?

    I have a program where the user is asked to choose: enter string, search for string

    My frequency counter is not working properly. How do I keep track of the frequencies for the left and right nodes? My frequency counter only gives for root:

    
 public void insert(String item){  		if(isEmpty()){		 			root = new TreeNode(item);                          System.out.println("inserted " + "'" + item + "'" + " into tree. Frequency: " + root.getFreq());                 }                // If string item already exists, do not insert another node, increase the frequency of the node containing the string                         else if(searchTree(root,item) == true){                             root.upFreq();                                                          System.out.println( "'" + item + "'" + " already exists! Frequency: " + root.getFreq());                  //if the string does not already exists, enters string item into new node                                } else{                                                root.add(item);                      System.out.println("inserted " + "'" + item + "'" + " into tree! Frequency: " + root.getFreq());                              }                            }   
    
  static boolean searchTree(TreeNode root, String item){             if(root == null){                 return false;             }             if(root.item.equals(item)){                 //root.upFreq();                                  return true;                         }             return searchTree(root.left, item) || searchTree(root.right, item);             } 


    Is This A Good Question/Topic? 0

    Replies To: count frequency of strings in java binary tree

    #2 baavgai ?Icon User is online

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    Re: count frequency of strings in java binary tree

    Posted 47 minutes ago

    Dude! How in the hell can your searchTree be static?!? Tell me TreeNode isn't public...

    Your searchTree is, um, disturbing. You should be going left or right, not returning left || right. You call it and seem to expect that root has meaning. It doesn't.

    Implement a find item. Go from there:

    
 private TreeNode findNode(TreeNode parent, String item) { /* your code here */ }  private TreeNode insert(TreeNode parent, String item) { /* your code here */ }  private boolean searchTree(String item) { return findNode(this.root, item)!=null; }  public void insert(String item){ 	if(isEmpty()){ 		this.root = new TreeNode(item);  		System.out.println("inserted " + "'" + item + "'" + " into tree. Frequency: " + root.getFreq()); 	} else { 		TreeNode node = findNode(this.root, item); 		if(node!=null) { 			node.upFreq(); 			System.out.print( "'" + item + "'" + " already exists!"); 		} else { 			node = insert(this.root, item); 			System.out.print("inserted " + "'" + item + "'" + " into tree!"); 		}   		System.out.println(" Frequency: " + node.getFreq()); 	} } 

    Hope this helps.


    #3 ccb77 ?Icon User is online

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    Re: count frequency of strings in java binary tree

    Posted 29 minutes ago

    Thanks, no the treenode was not public, and the static was a typo.....


    #4 ccb77 ?Icon User is online

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    Re: count frequency of strings in java binary tree

    Posted 18 minutes ago


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    Monday, April 1, 2013

    Nextdoor Hits 10K Neighborhoods, Gets Me To Stop Running At Night

    lost catAfter I had been running at night for more than a decade, a relatively under-the-radar startup called Nextdoor got me to start running during the day. Almost nobody likes to exercise, and for many, overcoming the motivational hump of putting on your shoes and gym clothes can be trying on even the best of days. One evening late in January I had finally overcome this initial barrier to entry, and was just about to stop blogging to do my usual 30-minute nightly sprint when I got the email. “Woman robbed at gunpoint in Dogpatch, San Francisco” the subject line screamed. Unlike many of the emails I constantly receive, this was highly relevant to me, especially because, upon further inspection, the robbery had happened one block from my house. Until this email, I hadn’t given too much thought to Nextdoor , a service that I signed up for at the Allen & Co conference last summer, where co-founder Nirav Tolia had given a talk about the local social network. The company started out as Fanbase in 2009, and was an attempt to create a user-generated content version of ESPN. Founders Tolia and Sarah Leary decided to pivot around May of 2010, and spent the next four to five months testing out different ideas. Fanbase officially pivoted to Nextdoor in September of 2010, starting out its pilot in Lorelei, a neighborhood in Menlo Park. Now a Facebook for your neighborhood, about half the Fanbase funding ended up carrying over, and Tolia and Leary ended up raising an additional $40.2 million for the new Nextdoor product. Initially enthusiastic, I had also invited my neighbors to use the platform, which had resulted in a de facto neighborhood support group (including the services of a pet psychic) when their adventurous cat Kiki went missing. I wrote a post about it for TechCrunch and then sort of forgot about it, rarely logging on to peruse the listings of free stuff and garage sales. Well I was certainly giving the service some thought now: “What if I had been that woman who was robbed?”"What if I had ventured out of my house just 15 minutes earlier?” I was still in my gym clothes, after so much effort, and feeling antsy from my day of work. Worse, I was now worried about a random stranger I had only heard about through the Internet, and I still needed a

    Source: http://feedproxy.google.com/~r/Techcrunch/~3/Xv9XgjwdzKs/

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    Giant panda artificially inseminated at U.S. National Zoo

    By Reuters

    Veterinarians at the National Zoo artificially inseminated the zoo's female giant panda Mei Xiang on Saturday after natural breeding failed to occur, zoo keepers said.

    Mei Xiang was put under general anesthesia and inseminated with a combination of fresh semen and frozen semen collected from the zoo's male giant panda Tian Tian. The scientists said they planned a second insemination later on Saturday.

    Veterinarians detected a rise in hormone levels on Tuesday, indicating Mei Xiang was ready to breed but said "no competent breeding" between the panda pair had occurred.

    "We are hopeful that our breeding efforts will be successful this year, and we're encouraged by all the behaviors and hormonal data we've seen so far," said Dave Wildt, head of the Center for Species Survival at the Smithsonian Conservation Biology Institute.

    Scientists will continue to monitor Mei Xiang's hormone levels in the coming months and conduct ultrasounds to determine whether she is pregnant. A pregnancy lasts between 95 and 160 days, they said.

    Mei Xiang has given birth to two cubs. One died a week after its birth last year. The other was born in 2005 and is now at the China Conservation and Research Center for the Giant Panda in Wolong.

    (Reporting by Jane Sutton; editing by Jackie Frank)

    (c) Copyright Thomson Reuters 2013. Click For Restrictions - http://about.reuters.com/fulllegal.asp

    Source: http://feeds.nbcnews.com/c/35002/f/653377/s/2a2b2190/l/0Lscience0Bnbcnews0N0C0Inews0C20A130C0A30C30A0C175321880Egiant0Epanda0Eartificially0Einseminated0Eat0Eus0Enational0Ezoo0Dlite/story01.htm

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    Sunday, March 31, 2013

    15th Annual Spartan Golf Outing and Dinner Auction - in Brookfield ...

    The Westmoor Country Club is one of the most premier country clubs, featuring a golf course designed by expert golf architects. The club offers an olympic-sized swimming pool, tennis courts and a banquet and dining area. The executive chef and staff design delicious and creative cuisine that will make every occasion a special one.? Westmoor Country club is located across from the Brookfield Square mall, just off the I-94 interchange.

    Source: http://brookfield-wi.patch.com/events/15th-annual-spartan-golf-outing-and-dinner-auction

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    Your Priority Should Be Safety When Doing Home Improvement | A2 ...

    Injuries that are sustained during a home improvement project are commonly the result of people not putting safety first. If you have been hurt, consider yourself blessed if you are not actually killed, while working on a home project. Most people that get hurt do so by climbing up on a ladder and falling off of it. Roof repair work, such as laying down shingles, is very dangerous even on a low pitch roof.

    If you do repairs, and if you use a ladder, you might find yourself falling if it is not properly secure. Most often, people are not setting the ladder up right or decide to reach for something which causes them to fall over. Follow these easy tips and you will be safer than ever when getting things done at home.

    Power equipment often features safety accessories. Cutting and grinding power tools have one such feature, which is a safety guard. You want to avoid removing the guards just because it is more convenient. Since there is a lot of flying debris, you could end up hurting your eyes, face or hands. It is critical that you also wear safety glasses. To avoid your hands suffering an injury, you should always put on leather gloves. All this is basic common sense and not hard to remember. Many people end up injured because they choose to ignore these safety aspects.

    If you are working on your home on something that involves hammering nails, then here is a nice little tip for you. This suggestion is essential for people who lack experience in working with hammers. Buy or construct something you can use to hold the nail when hammering it. A paperclip can easily be converted into a nail holder. Combs can also be used as nail holders and all you need to do is remove one or two teeth. It?s difficult to understand the pain if you have never hammered a finger.

    When dealing with anything that is electrical, you need to use common sense and safety. Dealing with electrical issues in homes that are 50 years or more old can be dangerous. Because of heat and cold, screws can actually become loose via expansion and contraction. Electrical wires that are grounded may be hot or electrical which can cause physical damage if you grab them. If your installation is brittle, it could be a byproduct of lighting fixtures in the same room. If there is no longer any protective barrier between you and exposed wires, get this fixed. Use these suggestions when working with electricity to stay safe.

    Most injuries occur because people refuse to implement the proper safety precautions first. If more people would think about their safety, fewer people would be hurt.

    Source: http://www.a2eto.org/your-priority-should-be-safety-when-doing-home-improvement/

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    Saturday, March 30, 2013

    Researchers show stem cell fate depends on 'grip'

    Friday, March 29, 2013

    The field of regenerative medicine holds great promise, propelled by greater understanding of how stem cells differentiate themselves into many of the body's different cell types. But clinical applications in the field have been slow to materialize, partially owing to difficulties in replicating the conditions these cells naturally experience.

    A team of researchers from the University of Pennsylvania has generated new insight on how a stem cell's environment influences what type of cell a stem cell will become. They have shown that whether human mesenchymal stem cells turn into fat or bone cells depends partially on how well they can "grip" the material they are growing in.

    The research was conducted by graduate student Sudhir Khetan and associate professor Jason Burdick, along with professor Christopher Chen, all of the School of Engineering and Applied Science's Department of Bioengineering. Others involved in the study include Murat Guvendiren, Wesley Legant and Daniel Cohen.

    Their study was published in the journal Nature Materials.

    Much research has been done on how stem cells grow on two-dimensional substrates, but comparatively little work has been done in three dimensions. Three-dimensional environments, or matrices, for stems cells have mostly been treated as simple scaffolding, rather than as a signal that influences the cells' development.

    Burdick and his colleagues were interested in how these three-dimensional matrices impact mechanotransduction, which is how the cell takes information about its physical environment and translates that to chemical signaling.

    "We're trying to understand how material signals can dictate stem cell response," Burdick said. "Rather than considering the material as an inert structure, it's really guiding stem cell fate and differentiation ? what kind of cells they will turn into."

    The mesenchymal stem cells the researchers studied are found in bone marrow and can develop into several cell types: osteoblasts, which are found in bone; chondrocytes, which are found in cartilage; and adipocytes, which are found in fat.

    The researchers cultured them in water-swollen polymer networks known as hydrogels, which share some similarities with the environments stem cells naturally grow in. These materials are generally soft and flexible ? contact lenses, for example, are a type of hydrogel ? but can vary in density and stiffness depending on the type and quantity of the bonds between the polymers. In this case, the researchers used covalently cross-linked gels, which contain irreversible chemical bonds.

    When seeded on top of two-dimensional covalently cross-linked gels, mesenchymal stem cells spread and pulled on the material differently depending on how stiff it was. Critically, the mechanics guide cell fate, or the type of cells they differentiate it into. A softer environment would produce more fat-like cells and a stiffer environment, where the cells can pull on the gel harder, would produce more bone-like cells.

    However, when the researchers put mesenchymal stem cells inside three-dimensional hydrogels of varying stiffness, they didn't see these kinds of changes.

    "In most covalently cross-linked gels, the cells can't spread into the matrix because they can't degrade the bonds ? they all become fat cells," Burdick said. "That tells us that in 3D covalent gels the cells don't translate the mechanical information the same way they do in a 2D system."

    To test this, the researchers changed the chemistry of their hydrogels so that the polymer chains were connected by a peptide that the cells could naturally degrade. They hypothesized that, as the cells spread, they would be able to get a better grip on their surrounding environment and thus be more likely to turn into bone-like cells.

    In order to determine how well the cells were pulling on their environment, the researchers used a technique developed by Chen's lab called 3D traction force microscopy. This technique involves seeding the gel with microscopic beads, then tracking their location before and after a cell is removed.

    "Because the gel is elastic and will relax back into its original position when you remove the cells," Chen said, "you can quantify how much the cells are pulling on the gel based on how much and which way it springs back after the cell is removed."

    The results showed that the stem cells' differentiation into bone-like cells was aided by their ability to better anchor themselves into the growth environment.

    "With our original experiment, we observed that the cells essentially didn't pull on the gel. They adhered to it and were viable, but we did not see bead displacement. They couldn't get a grip," Burdick said. "When we put the cells into a gel where they could degrade the bonds, we saw them spread into the matrix and deform it, displacing the beads."

    As an additional test, the researchers synthesized another hydrogel. This one had the same covalent bonds that the stem cells could naturally degrade and spread through but also another type of bond that could form when exposed to light. They let the stem cells spread as before, but at the point the cells would begin to differentiate ? about a week after they were first encapsulated ? the researchers further "set" the gel by exposing it to light, forming new bonds the cells couldn't degrade.

    "When we introduced these cross-links so they could no longer degrade the matrix, we saw an increase toward fat-like cells, even after letting them spread," Burdick said. "This further supports the idea that continuous degradation is needed for the cells to sense the material properties of their environment and transduce that into differentiation signals."

    Burdick and his colleagues see these results as helping develop a better fundamental understanding of how to engineer tissues using stem cells.

    "This is a model system for showing how the microenvironment can influence the fate of the cells," Burdick said.

    ###

    University of Pennsylvania: http://www.upenn.edu/pennnews

    Thanks to University of Pennsylvania for this article.

    This press release was posted to serve as a topic for discussion. Please comment below. We try our best to only post press releases that are associated with peer reviewed scientific literature. Critical discussions of the research are appreciated. If you need help finding a link to the original article, please contact us on twitter or via e-mail.

    This press release has been viewed 41 time(s).

    Source: http://www.labspaces.net/127524/Researchers_show_stem_cell_fate_depends_on__grip__

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